I used the standard HGT block & gearbox etc so everything is stock gearbox/driveshaft/Ecu wise (I used the 2.0 Alfa clutch as its a touch bigger).
I fitted the standard HGT trigger wheel to the 2.0 crankshaft, so long as you line up the three holes & only remove the lip where there are no bumps it works, well its been like it for 12 years no problem.
The only issue is the extra throw of the crank makes the shoulder of the conrod interfere with the bottom of the cylinder, so you have to cut some clearance off the the block.
I used Pauter rods as I fitted a TD04 Turbo, tbh I wouldn't bother now, Tjet engines are pretty cheap & much easier to tune (or a 1750TBI from an Alfa would be interesting).